bind_data_multiallelic.RdBind data in multi-allelic format to MALECOT project. Data should be formatted as a dataframe with three columns: "sample_ID", "locus" and "haplotype". Each row of this dataframe specifies a haplotype that was observed at that locus in that individual. Haplotypes should be coded as positive integers.
bind_data_multiallelic(project, df, pop = NULL, missing_data = -9, alleles = NULL, name = NULL, check_delete_output = TRUE)
| project | a MALECOT project, as produced by the function
|
|---|---|
| df | a dataframe with three columns, as decribed above |
| pop | ostensible populations of the samples |
| missing_data | what value represents missing data. Defaults to -9. Must be a positive or negative integer |
| alleles | the number of alleles at each locus. If scalar then the same number of alleles is assumed at all loci. If NULL then the number of alleles is inferred directly from data as the maximum observed value per locus |
| name | optional name of the data set to aid in record keeping |
| check_delete_output | whether to prompt the user before overwriting existing data |
# TODO